Preliminary Program
Integrative pathway modeling in systems biology and systems medicine
Abstract Book
Conference
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Monday, October 15
13:00 Registration opens (opposite the reception desk at Hotel Seeblick, Bernried)
14:45 - 15:00 Welcome by organizers
15:00 - 16:00 Keynote lecture by Edda Klipp
Systematic integration of models and data for yeast growth, division and
stress response
Coffee break
Session I: Systems biology and systems medicine applications
16:30 - 16:45 Mihaly Koltai
Ensemble modeling for drug resistance and sensitivity in colon cancer cell lines
16:45 - 17:00 Faiz Kahn
Integrative Workflow for Identification of Diagnostic and Therapeutic Markers
in Tumor Invasion
17:00 - 17:15 Silke Kühlwein
A Boolean network model to predict the behaviour of cofilin-1 in pancreatic
cancer
17:15 - 17:30 Stefan Legewie
Signal integration in alternative splicing networks
17:30 - 18:30 Keynote lecture by Julio Saez-Rodriguez
Logic models of large signaling networks from omics data
Dinner and get-together
Bar is reserved for the evening
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Tuesday, October 16
09:00 - 10:00 Keynote lecture by Benjamin M. Gyori
Automated model assembly from natural language
and scientific literature using INDRA
Coffee break
10:30 - 11:30 Keynote lecture by Clemens Kreutz
Modelling of pathways: some recent methodological insights
Session II: Parameter estimation and uncertainty analysis
11:30 - 11:45 Alejandro Villaverde
Open problems in observability and structural identifiability
11:45 - 12:00 Olivia Eriksson
Bayesian analysis combined with global sensitivity analysis
applied to dynamical intracellular pathway models
12:00 - 12:15 Neveen Estewy
Model reduction of a small metabolic-genetic network
12:15 - 12:30 Carolin Loos
20 Benchmark Problems for Dynamic Modeling
Lunch
14:00 - 15:30 Poster session I
Coffee break
16:00 - 17:00 Keynote lecture by Dirk Fey
Integrating tumour data and biological knowledge
through dynamic modelling
17:00 - 18:30 Poster session II
Conference Dinner at Museum Buchheim
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Wednesday, October 17
09:00 - 10:00 Keynote lecture by Marc R. Birtwistle
Mechanistic Modeling of Pan-Cancer Signaling Networks
Session III: Network reconstruction
10:00 - 10:15 Evert Bosdriez
Comparative network reconstruction to identify selective
anti-cancer drug combinations
10:15 - 10:30 Zoltan Tuza
Computing Biologically Relevant CRN Structures Using Time-Series Data
Coffee break
11:00 - 11:15 Poster award
Session IV: Standards & Tools
11:15 - 11:30 Daniel Lill
dMod - A Development Library for Dynamic Modeling in R
11:30 - 12:00 Tom Gebhardt and Faiz Khan
Annotation of Models and how to benefit from them
12:00- 12:15 Wolfgang Müller
FAIRDOMHub and its Write API
Lunch
14:00 - 15:30 Plenary discussion and closing remarks
15:30 Conference End
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Hackathon
Wednesday, October 17 (16:00 until 18:00)
Brainstorming session and speed-dating
Thursday, October 18 (9:00 until 18:00)
Hands-on sessions and discussion in small groups (coffee breaks, lunch, and dinner included)
Friday, October 19 (9:00 until 15:00)
Hands-on sessions and discussion in small groups (coffee breaks and lunch included)